Fully Managed Teams

Blockchain & Smart Contracts

Cross-Platform Development

Lab Data Processing Pipeline

Orbital Therapeutics

About

We developed a Data Processing Pipeline to automate lab data analysis and reporting. The system processes .txt lab files in AWS S3, triggers Lambda for automation, and runs Python scripts on EC2 to generate JSON, CSV, and PDF reports. CloudWatch monitors performance, while notifications alert stakeholders of success or errors. This streamlined research workflows, ensuring accuracy, efficiency, and real-time insights.

industry

BioTech

duration

Ongoing

team location

New York, United States

team size

1-5 people

project work

Project work

Challenge, approach, and impact

Handling Large Data Volumes

Processing high-frequency lab-generated data efficiently without performance bottlenecks.

Real-Time Processing & Automation

Ensuring seamless trigger-based execution for immediate data transformation and report generation.

System Reliability & Error Handling

Implementing robust mechanisms to detect, log, and notify stakeholders of processing errors.

Scalability & Performance Optimization

Designing an AWS-based architecture capable of handling increasing data loads while maintaining speed.

Data Integrity & Security

Ensuring accurate data processing and secure storage of sensitive research data in compliance with best practices.

Automated Data Ingestion

Implemented an S3-based trigger mechanism using AWS Lambda to automatically initiate processing upon file upload.

Efficient Data Processing

Developed Python scripts on EC2 to handle raw and supplementary data, ensuring accurate transformation and report generation.

Multi-Format Report Generation

Enabled automated report creation in JSON, CSV, and PDF formats, catering to various research needs.

Real-Time Notifications

Integrated AWS SNS and email alerts to inform stakeholders of processing success or errors immediately.

Robust Monitoring & Logging

Utilized AWS CloudWatch to track pipeline performance, log processing activities, and send alerts for quick issue resolution.

Scalable & Secure Infrastructure

Designed an AWS-powered architecture to support growing data loads while ensuring secure and compliant data storage.

Bussines Impact

Faster Data Processing

Automated workflows significantly reduced manual effort, improving data processing speed by 70%.

Improved Accuracy & Reliability

Eliminated human errors, ensuring 100% data integrity for research and reporting.

Enhanced Research Efficiency

Scientists and analysts received real-time reports, accelerating decision-making and experiment analysis.

Scalable & Future-Proof Solution

The AWS-based pipeline can handle increasing data volumes without performance degradation.

Cost Savings

Reduced manual intervention and optimized resource usage led to lower operational costs.

Proactive Issue Resolution

Automated notifications and CloudWatch monitoring minimized downtime and ensured smooth operations.

How we built

Domains

Data Analytics and Visualization

Databases

Cloud Computing

Architecture

services

backend development

Big Data & Analytics

Cloud Services

Prototyping & POCs

Research & Development

API Development & Integration

Database Design & Management

Performance Optimization

CI/CD Implementation

Data Engineering

roles

Product Owner

Data Engineer

Tech Lead

tech stack

Python

sql

AWS

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